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Aerobic and advanced septic systems: how they work and the upkeep rules

How aerobic and advanced septic systems differ from a conventional tank, and the service contracts and checks Florida, Suffolk County and Arizona require.

By the SepticRated team · Facts checked against the sources listed below on November 1, 2026. General information, not professional advice.

What makes a system aerobic

In a conventional septic tank, solids settle, scum floats and the liquid runs out to the drainfield. An aerobic treatment unit (ATU) adds air. EPA describes it as a small-scale version of a municipal sewage treatment plant that injects oxygen to boost bacterial activity and nutrient treatment. Some units add pretreatment and disinfection stages. EPA says ATUs suit small lots, poor soils, high water tables and sites near sensitive surface water, and that regular maintenance should be expected for the life of the unit.

ATUs are one of several advanced designs. EPA also describes recirculating sand filters, where a pump sends effluent through a sand filter for a high level of nutrient treatment, and drip systems, which need a dose tank and electrical power. EPA notes extra upkeep for several of these designs: regular maintenance for the life of an ATU, periodic maintenance for mound systems, and added expense and maintenance for drip systems.

Where newer rules call for them

The newer rules target nitrogen. UF/IFAS says a conventional septic tank removes only about 30 percent of the nitrogen that flows into it.

  • Florida: under House Bill 1379, DEP says new septic systems on lots of one acre or less must be enhanced nutrient-reducing systems from July 1, 2023 in areas where waterbodies fail water quality standards and a restoration plan is in place. Qualifying types include NSF 245-certified nitrogen-reducing aerobic treatment units, nitrogen-reducing performance-based treatment systems and in-ground nitrogen-reducing biofilters. DEP says these systems meet a 65 percent nitrogen-reduction standard, and it has a mapping tool for checking a property.
  • Suffolk County, NY: the Peconic Estuary Partnership says that since July 1, 2019, replacing or retrofitting a septic system has needed county health department approval, and that since July 1, 2021 innovative and alternative systems (I/A OWTS) have been required for new or expanded single-family homes. Grants toward replacements are in our state rules guide.

Florida: a maintenance contract and two inspections a year

Florida's rule for aerobic treatment units (Fla. Admin. Code 62-6.012, as amended effective June 21, 2022) puts the obligations in writing:

  • A current, unexpired maintenance contract with an approved maintenance entity is a condition of the system's approval. The first agreement must run at least two years, and renewals at least one year, for the life of the system.
  • The maintenance entity must inspect each unit at least two times a year, or four times a year for units serving commercial establishments.
  • Bypassing, removing or excluding any component after final approval is prohibited.
  • The unit must have a visual and audible alarm that alerts occupants to malfunctions.
  • Companies that service ATUs need an annual permit from the Department, and a maintenance entity that wants to stop providing service must give owners and the Department at least 30 days' written notice. If your maintenance entity goes out of business, you have 30 days from the service termination date to contract with another approved provider and send the Department a copy of the new agreement.

Suffolk County: warranty, then yearly contracts

Advanced systems need a service provider for the long term, and Suffolk County's guidance tells owners that their service provider can inspect and maintain the system.

Suffolk County's guidance for I/A OWTS owners says the first three years of operation and maintenance are covered by the manufacturer's warranty, after which homeowners need to sign yearly maintenance contracts and pay for maintenance. Owners must register the system with the county Department of Health Services at final approval, with the registration updated every three years and when the property changes hands, at no cost.

In a homeowner fact sheet posted in 2017, the county describes a control panel with an electrical connection and high-water alarms, says systems run continuously or on demand depending on the design, and, based on manufacturers' information, puts the electricity cost of the provisionally approved systems at about $57 to $266 a year. Covers can be landscaped around but must stay fully accessible, and the control panel should be protected and easy for service providers to reach.

Arizona: the permit holder's maintenance tasks

Arizona's rules put maintenance on the permit holder. Rule R18-9-A313 lists tasks that must be performed as applicable, including:

  • pumping accumulated residues and inspecting and cleaning treatment and distribution parts
  • cleaning, backwashing or replacing effluent filters according to the manufacturer's instructions
  • cleaning pump tanks, screens, switches, floats and controls
  • checking tanks, liners, seals and piping for watertightness
  • managing vegetation and drainage, and correcting ponding, odor, noise or settling

For aerobic systems under 3,000 gallons a day, the state general permit (R18-9-E315) also requires filters to be cleaned and replaced as necessary, and applicants submit the manufacturer's warranty and operation and maintenance recommendations. At sale, Arizona's transfer inspection applies. The rule requires the inspector to have a working knowledge of the type of facility being inspected, and the University of Arizona notes that not every inspector knows every system type, especially alternative systems, so ask about experience with yours.

Living with an advanced system

  • Take alarms seriously. Florida's rule and Suffolk County's guidance both describe alarms that warn of a malfunction; call your service provider rather than resetting it and forgetting.
  • Keep the service reports. EPA's inspection checklist includes reviewing required inspections, monitoring and reports for local compliance, and confirming that electrical connections, pumps, controls and wiring are intact.
  • After a flood, EPA says aerobic and media filter systems will need to be washed and raked, and electrical connections should be examined before power is restored.
  • When you sell in Arizona, the seller must give the buyer the inspection report and related permitting, operation and maintenance documents before the transfer, under R18-9-A316.

Common questions

Can I service my own aerobic unit in Florida?

Florida's rule makes a current contract with an approved maintenance entity a condition of approval, requires that entity to inspect the unit at least twice a year, and requires any business that services or repairs aerobic units to hold an annual permit from the Department.

Does an aerobic system still need pumping?

Yes. Arizona's maintenance rule lists pumping accumulated residues among the tasks the permit holder must ensure are done, as applicable, and Suffolk County's guidance for I/A owners estimates that the average system needs pumping every three to five years.

What happens to the service contract when I sell?

In Suffolk County the I/A registration is updated when the property transfers. In Arizona the seller must hand over operation and maintenance documents with the inspection report. Elsewhere, ask your provider how the contract transfers.

Sources

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